rs31080790 SNP Detail

Summary

• ID
  rs31080790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41355326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCCGGCGT TTCCTCTGGC CCCGTTATCT TCCTAAGAAC
  CCATATGTGT AAATCTTCCC GTAGACCATA GCAAAAACAA GCAAAGCAAC AACAGAAAAA
  Y
  AAAACAAAAC AAGTAAAATG TTGGATGCAC ATGCCCTACC ATTCCACAAG ATAAAAGCCT
  GATGCTATAG TCTAAGATTG AAGTCAGCTA CTTGCCGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44993985	mCV25115311	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146402187	ENSMUSSNP6253836	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31080790					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41355326 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	574 bp upstream
Rr547615	regulatory region 547615	1014 bp distal
Rr547616	regulatory region 547616	within coordinates
Rr547617	regulatory region 547617	256 bp proximal
Rr547618	regulatory region 547618	1419 bp proximal