rs31080387 SNP Detail

Summary

• ID
  rs31080387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30243564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAGGCTTG CCTGTGGATA TCAGTCCTAC AGTTAACAGC
  TTTCACACTA CAAGTAGCTG GGCTTCCTGG GAAACAGAGC TAAGTCTAGA ACGATTTGTG
  R
  CATGCATAGG ATATAACTCT CCTGCCTTTG AGATGCCATG TAAATAGGGA GACATGGAAG
  CATGCTTAGG GATCACAGCA GCAAAGGGCT GGGCAAGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45495548	mCV23030753	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss134729763	ENSMUSSNP1803590	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31080387					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30243564 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574734	regulatory region 574734			1093 bp distal
Tssr32888	transcription start site region 32888			680 bp downstream
Tssr32889	transcription start site region 32889			947 bp downstream