rs31076006 SNP Detail

Summary

• ID
  rs31076006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9069454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC GCACGGCCAC CAGGAGCCAG
  Y
  CACCACCTAC CTTGCTCGCC GCGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45495601	mCV25451727	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss320649432	CHEV_3_9004394	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31076006					SNP	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9069454 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12969	CpG island 12969			within coordinates
Rr374475	regulatory region 374475			within coordinates
Rr573365	regulatory region 573365			1048 bp distal
Rr573366	regulatory region 573366			within coordinates
Rr573367	regulatory region 573367			35 bp proximal
Rr573368	regulatory region 573368			1165 bp proximal
Tpd52	tumor protein D52			Intron
				Noncoding-Transcript-Variant
Tssr32570	transcription start site region 32570			538 bp upstream
Tssr32571	transcription start site region 32571			28 bp downstream
Tssr32572	transcription start site region 32572			60 bp downstream
Tssr32573	transcription start site region 32573			78 bp downstream
Tssr32574	transcription start site region 32574			230 bp downstream
Tssr32575	transcription start site region 32575			292 bp downstream
Tssr32576	transcription start site region 32576			366 bp downstream