rs31075539 SNP Detail

Summary

• ID
  rs31075539
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:3601399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCGGGTGCA ACTCAGTAGT GAAGAACGCA GCTGCCTAGC
  ATGAAAATAG CCCTACATTC CCTCCCTCCC AAGAGTACAC AGAAAGAAGC AAAATAAATT
  W
  AAAAAAAATT TTTAAATCTC AGGTTTACTT GTTTTCTCAC AAAAATTGCA GACTGTGCTC
  CTTGAAAGGA GAAGGAGCAG CAACAGACAA CACAGACTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44993296	mCV24131627	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
ss146002894	ENSMUSSNP6078102	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss325715243	CHEV_19_3551399	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31075539					SNP	T	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3601399 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp6r3	protein phosphatase 6, regulatory subunit 3			Intron
				Noncoding-Transcript-Variant
Rr542430	regulatory region 542430			450 bp proximal
Tssr157395	transcription start site region 157395			1972 bp upstream