rs31071347 SNP Detail

Summary

• ID
  rs31071347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:73346445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTG TTGGGTCCTG AGCTTTTATT
  R
  CCACATAGTC CCTTGGGATC CTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46477147	mCV22545268	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss134206737	ENSMUSSNP7205441	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss325896788	CHEV_X_71548178	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31071347					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73346445 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6ap1	ATPase, H+ transporting, lysosomal accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr692006	regulatory region 692006			1669 bp proximal
Tssr161326	transcription start site region 161326			438 bp downstream
Tssr161327	transcription start site region 161327			977 bp upstream
Tssr161328	transcription start site region 161328			1005 bp upstream
Tssr161329	transcription start site region 161329			1099 bp upstream
Tssr161330	transcription start site region 161330			1186 bp upstream
Tssr161331	transcription start site region 161331			1321 bp upstream
Tssr161332	transcription start site region 161332			1333 bp upstream
Tssr163632	transcription start site region 163632			1848 bp downstream