rs31066245 SNP Detail

Summary

• ID
  rs31066245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14298046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC ATCTCCAGTT TCCTACATGG
  Y
  GGAAGGAGGA AACGGATCCC CTGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39250090	mCV25068972	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss138987202	ENSMUSSNP1736106	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31066245					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14298046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6157	CpG island 6157			721 bp distal
Pdhb	pyruvate dehydrogenase (lipoamide) beta			Intron
				Noncoding-Transcript-Variant
Rr389295	regulatory region 389295			671 bp downstream
Rr487858	regulatory region 487858			1288 bp distal
Tssr127398	transcription start site region 127398			1231 bp downstream
Tssr127399	transcription start site region 127399			1259 bp downstream