rs31063361 SNP Detail

Summary

• ID
  rs31063361
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142236486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTGGTGC AAGATGACAC
  CGGAGGGTGG ACGACCGCGA TCAGAGACGG CTTGGTGGCC TCAGGGTGGG TGGACAGCGT
  TGCTCAGTGT GGGAAGTGCG ACCACTCTCG AGCAGCCACC ACAGCCAGGC ATGGTGGGGG
  ATGGGGTGGG GTGGTGAGCG GTTCCTACGG GAATATCAGC CCAGGGCTAC CCACTCCCGC
  R
  GGCTACCCAT TCCCCTGCAT TGTTTCCAAG TAAGAGGGCA TAACCCCAGA ATCCTCATCT
  ACCATAGTCC TCAGGTACTC CCGCCGCTGT GAGCTCAGCT CGGCTTGAAG AAACAGAAAA
  CATAGCCTTC CCTTGTTGAG TCAGACAGAA TTTCCAATTG CGCCCGCCCC GTGCACCGCT
  GTGCTACCAG TGCACTCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47012110	NES10860579	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31063361					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012110	NES10860579	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142236486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13887	CpG island 13887	within coordinates
Gbp7	guanylate binding protein 7	Intron
Gm66604	predicted gene, 66604	within coordinates
Rr586449	regulatory region 586449	373 bp distal
Rr586450	regulatory region 586450	within coordinates
Rr586451	regulatory region 586451	145 bp proximal
Tssr32116	transcription start site region 32116	427 bp downstream
Tssr32117	transcription start site region 32117	339 bp downstream
Tssr32118	transcription start site region 32118	1149 bp upstream