rs31063360 SNP Detail

Summary

• ID
  rs31063360
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142236454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTCCCG AGGTCCCAGG
  CCATAAACTC CACATTTGGT GCAAGATGAC ACCGGAGGGT GGACGACCGC GATCAGAGAC
  GGCTTGGTGG CCTCAGGGTG GGTGGACAGC GTTGCTCAGT GTGGGAAGTG CGACCACTCT
  CGAGCAGCCA CCACAGCCAG GCATGGTGGG GGATGGGGTG GGGTGGTGAG CGGTTCCTAC
  S
  GGAATATCAG CCCAGGGCTA CCCACTCCCG CAGGCTACCC ATTCCCCTGC ATTGTTTCCA
  AGTAAGAGGG CATAACCCCA GAATCCTCAT CTACCATAGT CCTCAGGTAC TCCCGCCGCT
  GTGAGCTCAG CTCGGCTTGA AGAAACAGAA AACATAGCCT TCCCTTGTTG AGTCAGACAG
  AATTTCCAAT TGCGCCCGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47012108	NES10860578	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G		C	G	G		G
ss321002546	CHEV_3_142193657	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31063360					SNP	G	G	G	G	G	G	C	G	G	G	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012108	NES10860578	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142236454 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13887	CpG island 13887	within coordinates
Gbp7	guanylate binding protein 7	Intron
Gm66604	predicted gene, 66604	within coordinates
Rr586449	regulatory region 586449	341 bp distal
Rr586450	regulatory region 586450	within coordinates
Rr586451	regulatory region 586451	177 bp proximal
Tssr32116	transcription start site region 32116	395 bp downstream
Tssr32117	transcription start site region 32117	307 bp downstream
Tssr32118	transcription start site region 32118	1181 bp upstream