rs31062288 SNP Detail

Summary

• ID
  rs31062288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142235437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGCCTG TAAGAAAGCA
  TCAGACATGG ATACTTCACT AGTCTGGTCT GTATGTAGAT GTTCCTTAAC ACAACACGAG
  GTTACATTCC AATCACAGAA TCACCCTGAC ATGAATATTT GTGAATTTAA AATGCACCAA
  GACATTTAAC CAAACAAAGA TGACAGCTTA GTCTGTTGTA TGTTACCAGA CATCTGGACA
  R
  TCACTTAAGA CAAAGCTTTT TTTCTTTCTT TCCCAAAACA CCTGTTGTAA TTCATTTCGG
  TTTTGCCAAA AAAAAAAAAA AAAACAAAAA AAAAAAAAAC CTCCATATAG TAGAAGGCAT
  AGCAAGCTAA CCCGTAGGGG ACATGAAAAA GGGAGAAGCC AGACTTTCAT ATGTGCTGCT
  GCACAGCAAG ATAAATGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47012092	NES10860653	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31062288					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012092	NES10860653	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142235437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13887	CpG island 13887	815 bp proximal
Gbp7	guanylate binding protein 7	666 bp upstream
Gm66604	predicted gene, 66604	within coordinates
Rr586449	regulatory region 586449	176 bp proximal
Rr586450	regulatory region 586450	677 bp proximal
Rr586451	regulatory region 586451	1194 bp proximal
Tssr32116	transcription start site region 32116	611 bp upstream
Tssr32117	transcription start site region 32117	653 bp upstream