rs31058067 SNP Detail

Summary

• ID
  rs31058067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26693120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA AGTGCTTAAA AAACGTCACA
  Y
  GGGCTGATAA ATAATTTTGT ATGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45495059	mCV24231351	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss134696958	ENSMUSSNP3557626	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss320687951	CHEV_3_26537893	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31058067					SNP	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26693120 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	1417 bp upstream
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	242 bp proximal
Rr574325	regulatory region 574325	476 bp proximal
Rr574326	regulatory region 574326	1185 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	1334 bp downstream
Tssr28598	transcription start site region 28598	1311 bp downstream