rs31055049 SNP Detail

Summary

• ID
  rs31055049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106456808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCAAAAAA ATTATATGCA GCCATGTATG GGTAGTTATG
  ACTGCAATTT ATGAATTGTT ATAGTATTTT ATACTTATAT TTCACATAGA ATACTACATC
  Y
  CAGAAATTTG AAATTTGCCT GAAACTCAAT AATTAGAAAG TGTTAATTAT GGATTTTTTT
  AAAAAAAGAT AACATCCAGG GGTTAGGGAA ATGCTGTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
ss45493874	mCV23490941	ABI	CRAMUS_MOUSE	f	SNP		C	T			C		T
ss46848334	NES10713746	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C		T		C		T
ss135579912	ENSMUSSNP188258	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss320863782	CHEV_3_106352410	CHEVERUD	SCREENING_POP	f	SNP										T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
rs31055049					SNP	C	C	T	T	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848334	NES10713746	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106456808 () rs orientation: forward

Symbol	Name	Function Class
Cept1	choline/ethanolaminephosphotransferase 1	1690 bp upstream
Cpgi13666	CpG island 13666	1131 bp distal
Dram2	DNA-damage regulated autophagy modulator 2	Intron
Rr375539	regulatory region 375539	439 bp downstream
Rr582855	regulatory region 582855	1921 bp distal
Rr582856	regulatory region 582856	1610 bp distal
Rr582857	regulatory region 582857	718 bp distal
Rr582858	regulatory region 582858	178 bp distal
Tssr31115	transcription start site region 31115	1778 bp downstream
Tssr31116	transcription start site region 31116	1754 bp downstream
Tssr31117	transcription start site region 31117	1604 bp downstream
Tssr34981	transcription start site region 34981	1914 bp upstream
Tssr34982	transcription start site region 34982	1899 bp upstream
Tssr34983	transcription start site region 34983	1769 bp upstream
Tssr34984	transcription start site region 34984	1711 bp upstream