rs31054937 SNP Detail

Summary

• ID
  rs31054937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153429952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATATTAAG TGCTACGACA
  CACAAGACTG TTCTGTGTGG CCCTTGGTCA CACAGCACCT TCTCGGGGCT GGAAACCGAA
  CACCTTAGTT TTCTCTCCGG GATGGGAAAC CTTCATGCTG CTCAAGTTTG GATCCACGGA
  GTCAGACTGG GCAACTGAAT AAGGACAGCG AGGAAAAACC AGAACAGGCT AGGGAGTGAA
  Y
  TTTCTCGGTG AGTTGGAAAC AAGTCTTCCC AGAAAAGGTC CTCACCAAGT AGGTCCACGC
  AAAGCCTTCA AGCCTGTGGC TAAGGAGTCA CTAAGAACAT GGAATGTACC AAGGCTTGAA
  AGAACTCAGC AAAATAGGGC TGGACTCTGG GTAGATACTG TCTGTTCACA TGTGAGCCTA
  AGGAAGTCCA ACATTCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45494370	mCV23571369	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss136111698	ENSMUSSNP551906	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31054937					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153429952 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13961	CpG island 13961			290 bp proximal
Rr587739	regulatory region 587739			403 bp distal
Rr587740	regulatory region 587740			within coordinates
Rr587741	regulatory region 587741			849 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			402 bp downstream
Tssr36240	transcription start site region 36240			789 bp downstream