rs31054736 SNP Detail

Summary

• ID
  rs31054736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27164496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGACCCA AAACCAGAGG
  ATCCCCATGA CACAGGGTGA CAACAGGATA TTTGAGAGGA GTCCCAGTGC TTCCAATATT
  GATAGTTCAG CAGAAGTCAA AAGCCTTGAC CCAAACCAAA GTCATTAAAA TGAACATTTG
  CAAGCAAAGA AATGTAGACA AAAGAGTCTA CTGTGAGACA CACTGTGAAA AACTACAGCT
  Y
  CCACAAGATT TTTTTTTCTC TGTTGTAGGG GAGGCTGTAA GGGTGAAAGG CAGGTACGAG
  AAGAAAAGAG TGGGACTAGG GTACAGCCTG AAATTCACAC AGATAAAAGG TCTGACTGAA
  AATAAAGATG CCTGAGTCCT AGAGTTGGCT ATACAACCAT CAGTTATTAT TCTTGGCTTT
  AGTTTCACAC ATATTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45495122	mCV24739759	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss134702095	ENSMUSSNP3470201	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31054736					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27164496 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Gm25152	predicted gene, 25152	1252 bp downstream
Rr574345	regulatory region 574345	1310 bp distal
Rr574346	regulatory region 574346	601 bp proximal
Rr574347	regulatory region 574347	725 bp proximal