rs31054101 SNP Detail

Summary

• ID
  rs31054101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69026672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGCCACTCC AATCCCAGGG GATCCAACTC CCTCTTCCGG CTTTCAGCAG CACCAAGCAT
  ACACAGTGCA CAGACATACA TGGAGAAGAA GCACTCATAC TTTTTGATGC CAGGTATGGG
  ATCTTTAATT TCAGCACTTG GGCGGTGAGG CCAGACTGAT CTACATAGTG AATTCTAGGC
  CAGGGAGGGC TACTTGACAG GTTACAAGCC AGCAAAGGCT ACACAGTGAG ACCTTGCCTT
  AATACATACA TACATACATA CATACATACA TACATACATA CATACACACA CACACACACA
  Y
  GCAAACACAT GCAAACACAC ACATACACAC AGAGAACATT TATCAACCAT TCCTGCAGCA
  ATATCTATAA TCATATGTAG AAAAAAAAAA GTACTTGGAC AATTAGGTTG TGAATTGAAC
  TATTTTTTTT TTCCCCAAGA AAGAGCATTT TCACTTGAAA GAATGACAGA GAAATTATGG
  TTATTTTGAT TTAGTGTCTG GCAGATTTAG TAAGTCTATG GCTTAAAGGA AAACAATCTA
  TAGTATTTAC TGCTAATGAT TAAAATGTGG GTTTTCAAGT AAAGATTAGT TTTAGAAAAC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45494640	mCV24616078	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31054101					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69026672 () rs orientation: forward

Symbol	Name	Function Class
Gm37558	predicted gene, 37558	403 bp downstream
Kpna4	karyopherin subunit alpha 4	Intron
Rr578128	regulatory region 578128	90 bp distal