rs31051579 SNP Detail

Summary

• ID
  rs31051579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95494523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTTCC CAACACACTC
  ATCTGGCAGC TCACAACTCC CTTCTATCCC AGCTTTAGAG AATCAAGTGC CACACTCTGG
  CATCTAAGGG AACCTGCATT CATGTACTCT ACCCACACAC AGGGAAACAA ACATATACAC
  ACATTTTTTT TAATTTTAAA CTGTAAAAAA ATTAAAGTCT CACCGAGCGT GGTGGCTCAC
  R
  CCTTTAATCC CAGCACTTGG GAGGCAGAGG CAGGCGGATT TTTGAGTTCG AGGCCAGCCT
  GGTCTACAAA GTGAGTTCCA GGACAGCCAG GGCTATATAG AGAAACCCTG TCTTGAACCC
  CACCCCCAAA AAATTAAAGT CTCTTACGTA GTTGTTTTCT TTTAACAGGT CCTTCACGTC
  TTGGAATCTA GTCAAGAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45495091	mCV23591613	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31051579					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95494523 () rs orientation: forward

Symbol	Name	Function Class
Gm40097	predicted gene, 40097	within coordinates
Gm42671	predicted gene 42671	1759 bp upstream
Golph3l	golgi phosphoprotein 3-like	1757 bp upstream
Hormad1	HORMA domain containing 1	Intron
Rr397841	regulatory region 397841	1381 bp upstream
Rr580975	regulatory region 580975	729 bp proximal
Rr580976	regulatory region 580976	1047 bp proximal
Rr580977	regulatory region 580977	1590 bp proximal
Rr580978	regulatory region 580978	1596 bp proximal
Rr580979	regulatory region 580979	1789 bp proximal
Tssr30603	transcription start site region 30603	1716 bp upstream
Tssr30604	transcription start site region 30604	1748 bp upstream
Tssr30605	transcription start site region 30605	1779 bp upstream
Tssr30606	transcription start site region 30606	1823 bp upstream