rs31050720 SNP Detail

Summary

• ID
  rs31050720
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86715932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGAGCA GTCACCACCA
  CTAGAGTAAA ACAGGCTTAT TTTAAAACTA ACTAGATTAT GGTTTCCAGC CTCAATGCCA
  TATTCTGCCT GCCCATTTTC TGCAGTGTTA AGAGTCTATA AAGTTATTTT CAGGTAAGTT
  TTGGATGCTA ATGAATAAGT GTGACGCAGT CGGTGTCAGC AGCATAACAA AAGCTCTTTG
  W
  ATGGAGTTAA AATATGCTGT CTACGCTATC CAGAGACCCT TCCCCAAATT ATTATTATTT
  TCAACAAAAG GCACTCAAAA CATCTGTGGA CCCACTGTGG GACCCCTCTT GGCAGGGTTA
  GAAAGCTACC AGCGGTGTCA AGTTCAAACA TCAAGCAAAT ACGGGGACAA CAGCCTCCAC
  ATAAGCTACA TGTGAATGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45494412	mCV24907529	ABI	CRAMUS_MOUSE	f	SNP	A	A	T		T		T
ss46735889	NES10753130	PERLEGEN	MM_PANEL2	f	SNP	A		T	T		T	T	T	T	T	T	T	T
ss135449101	ENSMUSSNP891058	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31050720					SNP	A	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735889	NES10753130	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86715932 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579387	regulatory region 579387			209 bp distal
Rr579388	regulatory region 579388			356 bp distal
Rr579389	regulatory region 579389			625 bp proximal