rs31049714 SNP Detail

Summary

• ID
  rs31049714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126391566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATGATCT CTGCAGTTGT
  AGCTGTCATC CTGAGAAGTG TGCGCGCACG CGAGTGCGAA TGTGTGTGTA TGTGTGTTCG
  GAGAGGAAAG GAGATGCATG TAAAATGCAA CATTTATCAC ATTTTTGGTA AATAGATGTC
  TCTTGCTCAG CCCGCGCTGT ATCTGCGATC TGACCCAGGT TCGGATGAGC TAACGAGAGA
  R
  CACTCGCTCT CTGAGATGGT GCCATATTTA TCGATGCCGA AAGTTCAACT TGGCTTGGTG
  GAGAGTCTGG TTCGGCATCC AAGTAGTTGT TCCGTTCAGG AAAAGGGCCA CCCAACAGAA
  CCCACGTCCC TGCCATGTAT CCGCTATCCT TCTTTGCACT AAGATGAGTC GCTCACCATC
  ATTCTAGGAT TTAGGTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45494199	mCV24011776	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss135836847	ENSMUSSNP1225437	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss320946585	CHEV_3_126300835	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31049714					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126391566 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			1453 bp downstream
Rr397994	regulatory region 397994			1369 bp upstream
Rr584646	regulatory region 584646			493 bp distal
Rr584647	regulatory region 584647			1010 bp distal
Rr584648	regulatory region 584648			898 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			1445 bp proximal
Tssr31566	transcription start site region 31566			1574 bp downstream
Tssr31567	transcription start site region 31567			1545 bp downstream
Tssr31568	transcription start site region 31568			1498 bp downstream
Tssr31569	transcription start site region 31569			1063 bp downstream
Tssr31570	transcription start site region 31570			931 bp downstream
Tssr31571	transcription start site region 31571			879 bp downstream
Tssr31572	transcription start site region 31572			804 bp downstream
Tssr31573	transcription start site region 31573			663 bp downstream
Tssr31574	transcription start site region 31574			504 bp downstream
Tssr31575	transcription start site region 31575			482 bp downstream