rs31048584 SNP Detail

Summary

• ID
  rs31048584
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107353705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACTGGA TGTGATAGAG
  TTACCTGGCC TAAGACAGTG GCTCTGGCAT TGGCCACTCA AAGTCCCAGT GTGGCCAGTT
  AAACGGGACA AGGGCCTCCA TGCTGTGCAT GTCTAGAAGG CTACCTACGG CCCTCTGGAT
  TTGTTCATAA GGATCTGCTC TGAGCTCTGA CTGGACCTCA AAACACATCT TAGATTCCTA
  K
  CAGGCTCAGG AAGGGGCACC ATTGTAGTAG TGCAAACGGA CGGAAGCTTC TCTACCAAGG
  CCTTCATCAA GGAAGACCCA GACCCTAGTT AATCCCAGAG AGCAACTAAC CCCAACACAG
  GCAAGGTCAC AGGTAAGTGT CAATTCAGGC CCCTCTCTGG AGAACTAGTC CCACTTTGAG
  AGTTTAACCA GGAGCTGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss45493342	mCV24801929	ABI	CRAMUS_MOUSE	f	SNP	G	T					T
ss46855683	NES10710869	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		G		T	T	T	T
ss135584089	ENSMUSSNP1613836	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T							T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs31048584					SNP	G	T	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855683	NES10710869	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107353705 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	511 bp proximal