rs31047920 SNP Detail

Summary

• ID
  rs31047920
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101205659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG TGAGCTCCTA AGAAAGAAGC
  W
  CTCATCTGCC TTCCCAGGGA GAGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss45493699	mCV22287105	ABI	CRAMUS_MOUSE	f	SNP		A			T	T
ss46813271	NES10715113	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T		T	T	T	T
ss135546292	ENSMUSSNP5232405	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs31047920					SNP	T	A	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813271	NES10715113	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101205659 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	1735 bp upstream
Gm65445	predicted gene, 65445	within coordinates
Rr582001	regulatory region 582001	1566 bp distal
Rr582002	regulatory region 582002	847 bp distal
Rr582003	regulatory region 582003	1680 bp proximal
Tssr30898	transcription start site region 30898	837 bp downstream
Tssr30899	transcription start site region 30899	807 bp downstream
Tssr34786	transcription start site region 34786	1777 bp upstream
Tssr34787	transcription start site region 34787	1854 bp downstream
Tssr34788	transcription start site region 34788	1891 bp downstream