rs31047437 SNP Detail

Summary

• ID
  rs31047437
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45110210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACCTGTC TTTCTAGAAA
  CAGACACGCA TGATGGCGCT TGGAGAATTG CTGGGCTCCT TCCTGGAGTT TGGTCCAGAA
  GCCTCCTTGC AGGTTGCTCT TTTGGAATCA AAAGGCCCGA GAGTTAGGGA GAGCAAGAAC
  TCAGGACCCA GAAACAGACA GTCAGTCTTA CGCAGAACAG TTGGGGCATG CAAGGCCCAA
  S
  TGGACTTTTG AGGACAGGAC GGGCTCATAC CAGGGTCTAA TCTCAGAAGC CTGGGAAGAG
  AGCAAAGGGA AACGAGCCCA ATCATGAAAA GGGGCTAAAG GAAGAAACAG TAAGATGGGT
  CAAGGGAGCC ACGCGGAGCA GGAAGAATGT GCTGCTGAGG CCCTTAGTGG AAGGGGTAGC
  AAGGCCAGTT CTGCTGAGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	WSB/EiJ
ss45990083	mCV22696772	ABI	CRAMUS_MOUSE	f	SNP		G	C			C
ss61003430	NES16114217	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C		G	C	G
ss149135494	ENSMUSSNP341741	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	WSB/EiJ
rs31047437					SNP	C	G	C	C	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003430	NES16114217	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45110210 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	911 bp downstream
Cpgi19060	CpG island 19060	1356 bp distal
Cpgi19061	CpG island 19061	652 bp distal
Ftl1	ferritin light polypeptide 1	902 bp upstream
Gm10252	predicted gene 10252	486 bp downstream
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	223 bp upstream
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	412 bp distal
Rr646451	regulatory region 646451	677 bp distal
Rr646452	regulatory region 646452	within coordinates
Rr646453	regulatory region 646453	234 bp proximal
Rr646454	regulatory region 646454	667 bp proximal
Tssr66541	transcription start site region 66541	1098 bp downstream
Tssr66542	transcription start site region 66542	278 bp upstream
Tssr72395	transcription start site region 72395	1361 bp upstream
Tssr72396	transcription start site region 72396	1329 bp upstream
Tssr72397	transcription start site region 72397	1055 bp upstream
Tssr72398	transcription start site region 72398	905 bp upstream
Tssr72399	transcription start site region 72399	136 bp downstream
Tssr72400	transcription start site region 72400	174 bp downstream