rs31046342 SNP Detail

Summary

• ID
  rs31046342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102110908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATCAACA CGCCCACTAG
  AAGGAGAAGG CTAATTAGTA TTGTTGATTG GTGACATAAC TTATAATATT TTTTCAGCAA
  ACCCCGTAAA ACGTATAAAC ACGTCAGTGA AAACACTAGT CTTCACAGCT AACTTTTGGA
  ATTCGCCTGT AAGGGCGCGC GCACTCCTGA CCACAGTCCC CTCAAACGGG TTCAAACTAA
  Y
  GCACGCACCA ACCACACAAC CATGCCAATA AAGACCCCTG CCACCCCTCC ATGAACTTCA
  GAAGGAGCTC ATCTTCGCGA TCTGGGCATC ACACCCGGTT TGGAGACATG AAAATTGAGA
  TTGCCCGGCT CCGACTCTCC TCTCCTCATC ACTTAGCCCA CCAGGCTACG GCTCCGCCCC
  CACTCCTGCT TCCACCACCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45492855	mCV23803363	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135554838	ENSMUSSNP2932899	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320854830	CHEV_3_102007515	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31046342					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102110908 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13625	CpG island 13625			17 bp proximal
Gm16160	predicted gene 16160			within coordinates
Rr582207	regulatory region 582207			within coordinates
Rr582208	regulatory region 582208			361 bp proximal
Rr582209	regulatory region 582209			464 bp proximal
Rr582210	regulatory region 582210			1091 bp proximal
Tssr34830	transcription start site region 34830			984 bp downstream
Vangl1	VANGL planar cell polarity 1			Intron
				Noncoding-Transcript-Variant