rs31044441 SNP Detail

Summary

• ID
  rs31044441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57753246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTT GAAATGTCCC TGGTAGTATG
  R
  ACCTCAGTTA CCACAGACTG TGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45493218	mCV22719532	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss135204807	ENSMUSSNP256218	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320781803	CHEV_3_57649747	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31044441					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57753246 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13199	CpG island 13199			1011 bp proximal
Pfn2	profilin 2			Intron
				mRNA-UTR
Rr577164	regulatory region 577164			1680 bp distal
Rr577165	regulatory region 577165			1838 bp distal
Rr577166	regulatory region 577166			1693 bp distal
Rr577167	regulatory region 577167			within coordinates
Rr577168	regulatory region 577168			43 bp proximal
Rr577169	regulatory region 577169			1310 bp proximal
Tssr33340	transcription start site region 33340			1653 bp downstream
Tssr33341	transcription start site region 33341			1865 bp downstream
Tssr33342	transcription start site region 33342			1899 bp downstream