rs31043599 SNP Detail

Summary

• ID
  rs31043599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:47294518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCCTTG ACCTTTAAAA
  GGATTGTGCC TTCAATTCTG AAGTTGTTGG AGGAATTTCT AAACTAGGAC CACTCGATTA
  GATCTGCATA TTAGAAAGGA AGCCTTCACA GCGATGTGTG CAATGCTCAT GAAAGTAGGA
  GAGGGGACTC TGGATATGAA AGCCAATGGA GAGATGGGGG CTATTCAGGA ATAGGTGAGA
  Y
  GAGTGAAACT GGACCAAGTG TCAGTGAGAA TGGAGACCAA GGAGTGTGAC ACAAGTCCTC
  CATGAGAAAC TGAATTGTAA AGACTCTGTG ACCTCTGAAT GTGAACAGTA ATGAGCAAGT
  GACTTGGTGA CCACTGAATG TGAACAGTAT TGAGCAAGTG ACTTGGTGAC CTCTGAATGT
  GAACAGTATT GAGCAAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39248559	mCV24203450	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss62385196	NES17228196	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	C	C	C		C	C	C		C
ss139397069	ENSMUSSNP634544	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss324593658	CHEV_14_47676736	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31043599					SNP	T	T	T	T	T	C	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62385196	NES17228196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47294518 () rs orientation: forward

Symbol	Name	Function Class
Samd4	sterile alpha motif domain containing 4	Intron