rs31043569 SNP Detail

Summary

• ID
  rs31043569
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104550004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC ATTTAAGTTT AATCTAATAC
  W
  TATTCTGTTT TCTACTTCTT CACCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45492715	mCV24812751	ABI	CRAMUS_MOUSE	f	SNP		A	T					T		T
ss46831728	NES10726320	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T		T	T	A	T	A	T	T
ss135570128	ENSMUSSNP2229070	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31043569					SNP	A	A	T	T	T	A	T	T	T	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831728	NES10726320	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104550004 () rs orientation: forward

Symbol	Name	Function Class
Gm43581	predicted gene 43581	306 bp upstream
Rr397914	regulatory region 397914	1385 bp upstream
Rr582561	regulatory region 582561	1206 bp distal
Rr582562	regulatory region 582562	1018 bp proximal
Rr582563	regulatory region 582563	1484 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	Intron