rs31043382 SNP Detail

Summary

• ID
  rs31043382
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78502748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCAGAG AGACCAACAG
  CGACTTTTCT GGCGCAGTCT TCTTTTCCTT CCATTTTTCC AACATAAAAG CAGCGGCTGA
  GAACAGGGCA GAGATAGTGA CTTCAGCAGC TCAGAGCCCA TTTACTTCTG TTAGGAGCAG
  GGGCTTTTGA CAGGAAAAGA ACATTTTGTT CAAATTTGAA AAGAGTTGGT GCAGTATATA
  W
  TTTTTCTCTC TCTCTCTCTG AGTGTGGCTA ATGTCACACT CCTATCTTCT CTTGTATGAT
  AGAGGAATAT GAACCTTCCT CCCTGCAGTC ATAATCAAGC CATGGTCATC ATAAATGACA
  TACACTCAAA ACACAAAACG AAAAACAAAA CCCTAAGATC GATATAACAT GAAAAAGACT
  CTCATCTCAT GGAAATGAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45492229	mCV23542535	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss135359220	ENSMUSSNP5975061	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31043382					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78502748 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	495 bp upstream
Rr578423	regulatory region 578423	506 bp distal
Rr578424	regulatory region 578424	79 bp distal
Tssr33603	transcription start site region 33603	1076 bp upstream
Tssr33604	transcription start site region 33604	1022 bp upstream
Tssr33605	transcription start site region 33605	1007 bp upstream
Tssr33606	transcription start site region 33606	992 bp upstream
Tssr33607	transcription start site region 33607	919 bp upstream
Tssr33608	transcription start site region 33608	824 bp upstream