rs31042876 SNP Detail

Summary

• ID
  rs31042876
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95027473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGAATCAGG CATTCAAGGC CTTTCTGGAT TGTATGAGCC TTGACTCTAA CGGGAAATGT
  CTAAGTCAGG GAGAGATTTC TAGGCGGGCT CTGACCAGGC TTGAGAGGAC CGTGTCCACG
  TGGAGGAACA GCACAGATCT GTGGTTCATT TAGAGATAAA GGATCAGAGT ACTGTGATCT
  GTTTACTCAC TAACAGATAC GTATTGAGTC CCTGAAACAG ACATGTTGAA TCTTTCATGG
  TCCTGATAAT GTGTAGCTAA TGTGAGTTAC TACTGCCCTT CATGATGCAA CAGCTATAAC
  W
  ATAGTGAACT GATAGTGTGC CACAGGACCT AGCAAGGGAC ACAGTGGAGC CAGCCATGGG
  AACTGAGGGG TTACATAGAA ATGCCTGAAA AGAAGAGTCA CTTAGTTTAG CTTTTTGTCC
  CTTGAGAATG CAAACTTGGG CTGGAAACAT GGCTCAGAGT TCCTTCCAGA GGTCCTCTGA
  GTTCAGAGCC AACCACATGG TGGCTCACAA CCATCTATAA TGAGATCTGG AGTCCTGGCC
  TGCAGGCATG CAGGCAGGCA GAATGCTGTA TACATAATAA ATAAATCTTA AAAAAAAAAA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45492168	mCV24559486	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31042876					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95027473 () rs orientation: forward

Symbol	Name	Function Class
Rr580818	regulatory region 580818	1380 bp proximal
Vps72	vacuolar protein sorting 72	within coordinates