rs31042455 SNP Detail

Summary

• ID
  rs31042455
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60525805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG TGACACTGAT TTTATTTGAT
  W
  TTATTTTTGC CTTAAATATA AATAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45492797	mCV23104477	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss320786789	CHEV_3_60422306	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31042455					SNP	A	T	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60525805 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375058	regulatory region 375058			34 bp downstream
Rr577444	regulatory region 577444			1966 bp distal
Rr577445	regulatory region 577445			1694 bp proximal
Tssr29316	transcription start site region 29316			1268 bp downstream
Tssr29317	transcription start site region 29317			1047 bp downstream
Tssr29318	transcription start site region 29318			981 bp downstream
Tssr29319	transcription start site region 29319			912 bp downstream
Tssr29320	transcription start site region 29320			180 bp downstream