rs31042211 SNP Detail

Summary

• ID
  rs31042211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126433231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTGGAAG CCTTCAGGTT
  ATTATATAGC ATTATGTGGA CCACCTAAAA TGTGAGCTGC TACCCTCAGG AAAGGAAAAT
  GCAGAGGCCC CTGGCCTCTA CCTATACTGT ACTACACTCT GTCTAGTATA GTAACCTTGT
  GATAATCAAA GTAAGGCTGT TGTTAAAGCT GTTGTCTGTG AAGATCAGAC AGGAACTAGG
  R
  GAGGGGAAGG GGAGAGGGAA GGAATGGAAG TGAAATCAAA CTGGAGAGAG GTCTTTTTGG
  AGGGGTTGAG ATGTGTACAC CTTGGTATTT TTCAGTTGTG TGAATGCTGT TAGCAAAGAG
  ACAGGGAAGG AGTTTGGTGC AAATCTATTG CTTAGGGAAC ATTCCGTCCT TCTGTATTAG
  ATCCATCAAG GAATGCAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45492407	mCV23466088	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss135837661	ENSMUSSNP3522952	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
ss320946890	CHEV_3_126342500	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31042211					SNP	G	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126433231 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			725 bp distal
Rr584664	regulatory region 584664			within coordinates
Rr584665	regulatory region 584665			1029 bp proximal
Rr584666	regulatory region 584666			1662 bp proximal