rs31041523 SNP Detail

Summary

• ID
  rs31041523
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:157698518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAT TTTCTTCTAG AATTCTTAGT
  S
  TTTGCTATTA AGACTCAGGG TTGGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45492064	mCV24009830	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss136135472	ENSMUSSNP2819639	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss321034827	CHEV_3_157655845	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31041523					SNP	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:157698518 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd13c	ankyrin repeat domain 13c			Intron
				Noncoding-Transcript-Variant
Rr588086	regulatory region 588086			274 bp proximal
Tssr32505	transcription start site region 32505			724 bp upstream
Tssr32506	transcription start site region 32506			745 bp upstream
Tssr32507	transcription start site region 32507			777 bp upstream
Tssr32508	transcription start site region 32508			837 bp upstream