rs31040284 SNP Detail

Summary

• ID
  rs31040284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87662098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGA TCGATGTTCA ATCGCCTCAG
  Y
  CTCCTATGGC TTCTACCCCA CCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45490969	mCV25326086	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss135468089	ENSMUSSNP4018898	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31040284					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87662098 () rs orientation: forward

Symbol	Name	Function Class
Pear1	platelet endothelial aggregation receptor 1	Intron
Rr579538	regulatory region 579538	1329 bp proximal
Tssr33951	transcription start site region 33951	1532 bp upstream