rs31039859 SNP Detail

Summary

• ID
  rs31039859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135391857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTATGGC TATGCATATG
  TCTCTGACGA GCACAGCGTC TAGAACAAGT TACAGCTTTG TTTATTCTAG ATATATGCAG
  AAGCTGCAGG ATGGGTTGAT CATGCGGTGG AGCCCAGCTA AACATACTGC TTTGAGGTAG
  CAGCATTAGC GGGAAGACAC AGGCAGTGTG CTTGGGTTGT ATACACTTTT AACTGACAAC
  Y
  GCTGCCAATC ATTTCCACAG CCCCTCTCAG CAAAGACAGC TTCCCATGCA AACACTTACA
  TTCTCTTGAG TGTGTTGGCA ACAACAAAAG ATTAAATATG TATGCAAATG TATACATGGC
  GATATACACA TATAGTGATA CTATATATAT ATATATCACT TTATTTAGAC AGACACTAAG
  TATATACACT AATTAATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45491739	mCV25339281	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135928497	ENSMUSSNP723910	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31039859					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135391857 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585765	regulatory region 585765	378 bp proximal
Rr585766	regulatory region 585766	1875 bp proximal
Tssr35822	transcription start site region 35822	1789 bp downstream