rs31038605 SNP Detail

Summary

• ID
  rs31038605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153365421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCCAGAG CATATTACTA
  ATGTGATGGA CCTTTGTTAC CAAAGAACTG TACTTAGAAA AGGAAACAAA CTTCAGAGAA
  ATAAAAATCC CAGCAACAGC CCCTGGAGTA TAGGAGGCCC CGCCACAAGG CTCGTGAAGA
  AGTGGAACAG AGGCCTCAGC ACAGTCCACT CAGTCCACTG TCAGCCTGAG ACGCCCGCCA
  R
  GCTGGCTGGC TGAAAGAACA TGCTGGGTCT GTTCTGTTTG CTGTAGTTTT CTGAGCAGGC
  TCCATGGTGA GCGAAGAGGC GAACAGGAAT CTTCCATTAT CCCTTTCAGC TGAAAAGAAA
  CCTCACCACA GAATGCACTT ACTGTGAAAG TTGGTACAAA CAGCAGCCAC GGGGAGGTCG
  CGATTAGAGG AGGCTTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45490757	mCV24207541	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31038605					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153365421 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			924 bp distal
Rr587720	regulatory region 587720			1191 bp distal
Rr587721	regulatory region 587721			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant