rs31038394 SNP Detail

Summary

• ID
  rs31038394
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67887188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAATTACCTC AGAGATGACA CGGAAAGAGC TTAATGGTTC CATTGAGGCA GGGAGCAGCC
  AAAGGGGAGT AGCAGGATGG TTCATCTTCT TTTTATGATG AGTGATGAGC CTATGAAACT
  CATTTCTATT CACCATGCCT GCAATATCTA AAGAACTTAC AAGAGATGCC AATTATTATC
  TGTTTTCTGT TCTGGGTTCC CAGAGATGTT AGGATTTAGG TCACTATGTT ACTATGTAAG
  AAAATGTAGC AGAAGAACTT CCATGGCTGG GGATTTTTTT TTTTTTTTTT TTTTTTTTTG
  K
  CATATAGTCA CTATAGTTAC AAGACTTAAG AACCAGATCT CCATTCTTGC TTTGAAGAGT
  TTGTTAAGAC GGACTATCTG CCATAGTGCC TCCTCCAGCT TTGACCATCT CATCCTCTGC
  CCTAGACAGA GGGAAGTCCT TGAGGAACAC ACAGAACTCA GACTGAAGAA AATGTGTTTA
  TATTGTCCCC TGCACTCATT AAGCATCCCT GAAGACCAGG TAGTAACTGT ACCAACCAGG
  GCTGGAGAGA TGTCTTAGGG GTTAAGAGCA CTCACTGCTC TTTCAGAGGA GCCACATATG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45491215	mCV23633213	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31038394					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67887188 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	Intron
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577969	regulatory region 577969	339 bp proximal