rs31037866 SNP Detail

Summary

• ID
  rs31037866
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27249285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGAGGTC AAAGTTCAAC
  TTGTAGGATT CAGTTCGCCT CCTCTTCATC AGCCTCAGAG GCTGGACTCA GGTCCTTAGG
  CCTAGCCGCA GGTGCCTTTA CCTGCTGAGC CGTCTCCCTG ACTCTCTTCT GAATGATTGA
  ACGTCCATTT TGATGAGGCT GTTGAGCTTG CTACAAAACC TCTGACTGAG GGTTTTTTTT
  W
  AAATTTGTTT AATTTTTTAA AACTTTTTAT TGATTCATTG TGAGTTTCAC ATCATACATC
  CAACCCCACT CATCTCCCTG TCCCTTCATT TTCTCCCTCT GCCCTTGTAG CTTCCCCCCA
  AAAGAAAAAA AAATGCCTTG TGTGGAAGCT GTGGCGTGTC ACAGTGTGTC ACGTGGTACA
  CCCTTTTATC CACACATCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45492010	mCV24689765	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss134702668	ENSMUSSNP836469	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31037866					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27249285 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574363	regulatory region 574363			701 bp distal
Rr574364	regulatory region 574364			1470 bp proximal
Tssr28611	transcription start site region 28611			870 bp downstream
Tssr28612	transcription start site region 28612			763 bp downstream
Tssr28613	transcription start site region 28613			437 bp downstream
Tssr32841	transcription start site region 32841			1052 bp upstream
Tssr32842	transcription start site region 32842			978 bp upstream
Tssr32843	transcription start site region 32843			930 bp upstream