rs31034388 SNP Detail

Summary

• ID
  rs31034388
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152591769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGAAAC TCTTCCCAGT
  GGAAAGAGCA AGAATACCAA GATTGAACTA AGAAATGGCA CGTTGAAAAT AAATATGGAG
  AGGGTCCTAT AGTGGTGTGA GAATAGCAGA AGGCTATTCA GATAATGTCT TTCAGATAAT
  GCTCAGTGGG TGTGAGTTTA AATAACCCAA GGTCCTAGCT TGCAAATACG GGTATTTGCC
  M
  TGTGAGCATT GTCCTGTAGC TATTCTCAAC CCCCGATTTC ACCCTATCAT GTACACATAG
  CTACAGACAG GAGTCTTTAA GATAACCTTA TATTTGCTCC ACACAAGTCA GTAGCCTGAT
  TTCTATGAAT GAAAAGCATC TCACAGGACT GGAGAGGTGG CCTAGTGAGG CAGAACTTGC
  TGTATATGCC TAGGAACCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45490904	mCV25265516	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A	A
ss136104381	ENSMUSSNP2517412	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		A
ss321029038	CHEV_3_152549096	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31034388					SNP	C	C	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152591769 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	420 bp proximal
Rr587620	regulatory region 587620	726 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32421	transcription start site region 32421	1839 bp downstream
Tssr32422	transcription start site region 32422	1766 bp downstream