rs31025640 SNP Detail

Summary

• ID
  rs31025640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90615807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTCCACCT CAGGCATCTC CTTGAAGTCT ACAACCCTTT
  GTAGAAAATA ACAGGCTTTT CCAATCAGCA CACTGTGGAC ATTATAATTA TTGGCTTTTT
  Y
  GGTCTGTCTC CCTTACTGCA TTATTAACCT GCTAACTCAT CACTAGATAA GTTTTGCCTG
  CAGGAGACAG ATAAACATTG GCTAAACACA ACGAAGACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45490293	mCV24246074	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss60423952	NES15930003	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C		C		C	T		C		C	C	T		T
ss135478734	ENSMUSSNP1473967	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T					T
ss320838620	CHEV_3_90512422	CHEVERUD	SCREENING_POP	f	SNP													C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31025640					SNP	C	C	C	C	T	C	C	C	C	T	C	T	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423952	NES15930003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90615807 () rs orientation: forward

Symbol	Name	Function Class
Gm42579	predicted gene 42579	381 bp downstream
Rr580435	regulatory region 580435	148 bp proximal
Rr580436	regulatory region 580436	249 bp proximal
Rr580437	regulatory region 580437	1209 bp proximal
Rr580438	regulatory region 580438	1468 bp proximal
Rr580439	regulatory region 580439	1729 bp proximal