rs31017069 SNP Detail

Summary

• ID
  rs31017069
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146368622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAAGAC TCATCGAATG
  AATTTTTCTT TTCATGGCCT TTTAAAAAGT TAAGAACATT ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAA ATATACACCA CATAAACACA ATGCTTGTTG
  AGTCAAGGTC TTAATACTCA GTCTAAGCTT GCCTCAGTTC ACCACAGCTA CAAATACAGA
  K
  TACAAGAGTA CATCACTGTG GATGCCTATA AAATAAAACT GTGTTTCAAT TGTCTGACAA
  AAGTCAGACT GGGTCCTAAA TAAATAGCAC ATTCCTCTTA ACTGTCAGTT AGGTAAGTGT
  CCTTGGACAG CGTTCTGTGG TTCTCAGAGA AAGAAAGTAT GGACTGTATT TGACACAGTT
  GTTAAGCTGT ATTGGTAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49693548	NES12968914	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31017069					SNP	G	G	G	G	T	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693548	NES12968914	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146368622 () rs orientation: forward

Symbol	Name	Function Class
Gm29514	predicted gene 29514	within coordinates
Gm69681	predicted gene, 69681	within coordinates
Rr420040	regulatory region 420040	1338 bp proximal
Rr420041	regulatory region 420041	1887 bp proximal