rs31016940 SNP Detail

Summary

• ID
  rs31016940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5529935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTCCGT GTGAGCATGG
  AGAGTGAACG CTAAGTGATG GGAGACGATG GCAATGTGTC CTTCAGCAAT GACCATTCTG
  TTTGTTTTTA AAAATGGATG ATGGAATGGT TTCCCATATT CCTCACATAT TTATGATCTA
  TATTGTGACT TACTAATGAA GTATCTACTA TTGACCCGTA AGAAAGGAGG AAAGACATGA
  Y
  CAAGAATTCG GTTTTTTCCT TGTCTATTAG GCAGACATGA AACAGAGCAC TGTTTGCTGT
  AATATGAAAT GTGTTCTCAC AAGCAGGGGA GACACAAATG CAAAATGAGA AAATGAGCAG
  GGATATCAAG AGCCCATTTA TAGAAAAGTA AAGTCCAAGT AGGAAATAAA TCCCGAGGGG
  AAAAAATCAT AGCTAGTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47507421	NES10324755	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31016940					SNP	T	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47507421	NES10324755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5529935 () rs orientation: forward

Symbol	Name	Function Class
Gm30325	predicted gene, 30325	within coordinates
Pttg1ip2	PTTG1IP family member 2	792 bp upstream
Rr607007	regulatory region 607007	1810 bp proximal
Rr607008	regulatory region 607008	1825 bp proximal
Rr607009	regulatory region 607009	1882 bp proximal
Tssr45089	transcription start site region 45089	746 bp downstream
Tssr45090	transcription start site region 45090	1616 bp upstream
Tssr50049	transcription start site region 50049	875 bp upstream
Tssr50050	transcription start site region 50050	860 bp upstream
Tssr50051	transcription start site region 50051	828 bp upstream
Tssr50052	transcription start site region 50052	799 bp upstream