rs31015861 SNP Detail

Summary

• ID
  rs31015861
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5530237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGAGAA AATGAGCAGG
  GATATCAAGA GCCCATTTAT AGAAAAGTAA AGTCCAAGTA GGAAATAAAT CCCGAGGGGA
  AAAAATCATA GCTAGTACAA AAAAAAAAAA AGAGTAGTAA TGAACTGTGA TGCTGTGTTC
  ATCGGGTGGG CAACCGTTTA CAAAGGAAAC TAACCCTGCT GCTGGACATG TGGGGCAAGC
  S
  ACCTTTGGCA CAACTGTGAA TTGCTAGTGC CTTTGGAAAG CAACTGGAGT TAGCTGCTAC
  ATACATACAC ATACATACAT ACATACATAC ATACATACAT ACACACACAC ACACACACAC
  ACACACACCC TTCCGTCATC TCAGGAAGTG TGCTTCTTGC TGCTCATTGG CTCTTATGGT
  GCAGCTCCTG ACATGGAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47507412	NES10324761	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31015861					SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47507412	NES10324761	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5530237 () rs orientation: forward

Symbol	Name	Function Class
Gm30325	predicted gene, 30325	within coordinates
Pttg1ip2	PTTG1IP family member 2	1094 bp upstream
Rr607007	regulatory region 607007	1508 bp proximal
Rr607008	regulatory region 607008	1523 bp proximal
Rr607009	regulatory region 607009	1580 bp proximal
Tssr45089	transcription start site region 45089	1048 bp downstream
Tssr45090	transcription start site region 45090	1314 bp upstream
Tssr50049	transcription start site region 50049	1177 bp upstream
Tssr50050	transcription start site region 50050	1162 bp upstream
Tssr50051	transcription start site region 50051	1130 bp upstream
Tssr50052	transcription start site region 50052	1101 bp upstream