rs31014988 SNP Detail

Summary

• ID
  rs31014988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69433409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATATGTG CATGTGGTAT
  GTGTGTATGT GTGTATGTGT GTATATATGT GTGTATGTGT GCATGTTTAG AAGCTGTGCA
  AGAAAACATG TTGGTTTTTT ACCTGAAAGC CGATTTTTAT CACTGCCCCT TTAACAGTGT
  TCAGAAATGA ATACTTGATG TTCTTGTGAA GGGAACAATC AGAAGGTAAA AATCCTCCCA
  R
  AGTGTTGTTC CTTTCCTGAC TCTGCTATGT GAGACTTCAT AGAAAGGGCT TCTTGTATGG
  GGCCCTTTTG CTTCATTTCA CATTGATCAT TTGCCACCCT GATTTCCATT GTGGATGCTC
  GAGTTGTGGT TCAGCAGTCT TCTCCATTCT TCTCTATTCA GCTAAAGTTG GATAGATGTG
  ACCATGCTTA CTGTACATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47007510	NES10776509	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31014988					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47007510	NES10776509	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69433409 () rs orientation: forward

Symbol	Name	Function Class
Ppm1l	protein phosphatase 1 (formerly 2C)-like	Intron
Rr578196	regulatory region 578196	1253 bp proximal