rs31014956 SNP Detail

Summary

• ID
  rs31014956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5532144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTACCCCT CTGCCTCAGT
  GCAGAGCCAA GTTGAAGAAT TCATTAGAAT GCTTAAATAA AGGGACAAAA TGCAGAGGTG
  TGGCTGAAGT TACAAGAACA AAGGACAGTG ATGCACTTAG GGGTTAGAGT GAAGGCAAGA
  TGCTACCAGA TACCATCAGC AGGGACTACA CAGAACGCTG GATCAGAAAC AGCCGCTGCT
  Y
  GCTGAATGAG AGCTGTGGTC TCAAGGCTGC AGAAATTCGT TTGTTTGATA GAGTAGGAGG
  GGGACATATA TCACAATCTC TCTCCCTCTC TCTCTCTCTC TCTCTCTCTC TCTCCCCTCC
  ATTCTTAACC CATGCCAGAG AGGCAAAGAA ACTTGGGCAG TACCTCTGCG AAGGACAAGG
  CAGGGCAGGG AGGGATGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47507397	NES10324594	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	T	C	T		C
ss321451373	CHEV_5_5482144	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31014956					SNP	C	C	C	C	C	C	T	C	C	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47507397	NES10324594	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5532144 () rs orientation: forward

Symbol	Name	Function Class
Gm30325	predicted gene, 30325	within coordinates
Rr607007	regulatory region 607007	202 bp distal
Rr607008	regulatory region 607008	363 bp distal
Rr607009	regulatory region 607009	296 bp distal
Rr607010	regulatory region 607010	1176 bp proximal
Tssr45090	transcription start site region 45090	590 bp downstream