rs31012880 SNP Detail

Summary

• ID
  rs31012880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87654983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TATACCCTGC CTATCCCTGG
  R
  CACTAGCGCT GACAGGAAAA CAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45490174	mCV24891974	ABI	CRAMUS_MOUSE	f	SNP		G	A						G
ss51576179	NES14670742	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A	G	G	G	A	G	G	G	G	G
ss135467927	ENSMUSSNP2123937	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31012880					SNP	G	G	A	G	G	G	A	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51576179	NES14670742	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87654983 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	Intron
Pear1	platelet endothelial aggregation receptor 1	1421 bp downstream
Rr579535	regulatory region 579535	937 bp proximal
Rr579536	regulatory region 579536	1318 bp proximal
Rr579537	regulatory region 579537	1526 bp proximal
Tssr33946	transcription start site region 33946	857 bp downstream
Tssr33947	transcription start site region 33947	880 bp downstream
Tssr33948	transcription start site region 33948	901 bp downstream
Tssr33949	transcription start site region 33949	923 bp downstream
Tssr33950	transcription start site region 33950	943 bp downstream