rs31011770 SNP Detail

Summary

• ID
  rs31011770
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101442036 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         TAAAAGAAG GAAGGGTTTA TCTCCATCTG AAGGATGCAG
  TCTGTCACAG TGGGGAAGGC ACCTTGGCAG CAGTGTGAGG CAGCTTGTCA TCCTGTATCT
  S
  TGGTCAAGAA GCAGAGGAAG GTAACCATTG GTGCTCACCT TGCTTCTGCC CCCTTCATTT
  AGACTGGAAC TCCAGCCCCT GAGATGGTGC TGTCTGCGAT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss46468735	mCV24838703	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
ss135548201	ENSMUSSNP3872250	ENSEMBL	ENSEMBL_Sanger	r	SNP				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs31011770					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101442036 () rs orientation: reverse

Symbol	Name	Function Class
Gm33162	predicted gene, 33162	within coordinates
Gm65570	predicted gene, 65570	within coordinates
Gm65575	predicted gene, 65575	1743 bp upstream
Rr582075	regulatory region 582075	1034 bp distal
Rr582076	regulatory region 582076	1572 bp proximal
Rr582077	regulatory region 582077	1858 bp proximal
Tssr34790	transcription start site region 34790	1715 bp downstream