rs31011320 SNP Detail

Summary

• ID
  rs31011320
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106456869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG TGTTAATTAT GGATTTTTTT
  W
  AAAAAAGATA ACATCCAGGG GTTAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45490058	mCV23490943	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss135579915	ENSMUSSNP4674677	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31011320					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106456869 () rs orientation: forward

Symbol	Name	Function Class
Cept1	choline/ethanolaminephosphotransferase 1	1751 bp upstream
Cpgi13666	CpG island 13666	1192 bp distal
Dram2	DNA-damage regulated autophagy modulator 2	Intron
Rr375539	regulatory region 375539	500 bp downstream
Rr582855	regulatory region 582855	1982 bp distal
Rr582856	regulatory region 582856	1671 bp distal
Rr582857	regulatory region 582857	779 bp distal
Rr582858	regulatory region 582858	239 bp distal
Tssr31115	transcription start site region 31115	1839 bp downstream
Tssr31116	transcription start site region 31116	1815 bp downstream
Tssr31117	transcription start site region 31117	1665 bp downstream
Tssr34981	transcription start site region 34981	1975 bp upstream
Tssr34982	transcription start site region 34982	1960 bp upstream
Tssr34983	transcription start site region 34983	1830 bp upstream
Tssr34984	transcription start site region 34984	1772 bp upstream