rs31008371 SNP Detail

Summary

• ID
  rs31008371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69433995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAAAGC ATTGCCTTTT
  CTAACGGAAC ATGTAGATGT CTGACTTGTG CTTCACGAGG ATAATTTAAA GTTTCAGGAG
  TTATTAGAGA AATCAGAACT GCACATCCTT GGGTGATTGC ATGTACAAAT TGGGTTTCAT
  GGATCTTTGG TGGGGTTGAC AAAATAATTA TTTTAATGAA ACTGGTACAG ACATTGTCCA
  Y
  TTAAAATCTA TGTCCAATGA CCAAAAACAA TACAAATAAA AGTGAAAATA CGCATTGCTT
  TCTTATATAC ACTCTAGTAC AATTTTATTA ACTGCTAATG AAGTTTAGAA TCCTCCTGGG
  ATCGTCGCAC AGGATTGTTA GAACGTCTTT GGGGAAGTTT AATAGGAATG GCTCCCATCC
  TTCCAGTCAC TTGAAATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47007532	NES10776520	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31008371					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47007532	NES10776520	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69433995 () rs orientation: forward

Symbol	Name	Function Class
Ppm1l	protein phosphatase 1 (formerly 2C)-like	Intron
Rr578196	regulatory region 578196	667 bp proximal