rs31007602 SNP Detail

Summary

• ID
  rs31007602
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:3601086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAACATGT GCCTAAAATC TCAATCAAGT GTACCCAGAG
  AGGATCCATG GCTTTGCTGA CACATGGCTG ATACTTGCAT GCATATAGTG AATATAAACT
  S
  GAGCAGGGAA ACTCTCACAT AAAGACATAC ATTTTTAAAA ATAAACATTT TTGTTGTTTT
  TTTTAAAGAG TACATAAAAC AATTGGGCAT GATAATGCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44987108	mCV24131623	ABI	CRAMUS_MOUSE	f	SNP		C	G					C		G
ss50588966	NES13656405	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G		C	G	C	C		C	G	C	C		C
ss146002891	ENSMUSSNP2079105	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							G
ss325715242	CHEV_19_3551086	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31007602					SNP	C	C	G	G	G	C	G	C	C	G	C	C	G	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50588966	NES13656405	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3601086 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp6r3	protein phosphatase 6, regulatory subunit 3			Intron
				Noncoding-Transcript-Variant
Rr542430	regulatory region 542430			763 bp proximal
Tssr157395	transcription start site region 157395			1659 bp upstream