rs31006435 SNP Detail

Summary

• ID
  rs31006435
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122068214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCCAGCA GAAGGTGAGC TGGGTCTCAG GTTCTCCGGG
  TCTCCTCGCC GCTGAGCAGA GCGGCTCGGC AGGGCGGAGG AGAGCGACGA GGAACCGAGC
  S
  GGTCGCGCGT GGTACTGCGC CGGACTGGCT CGGACCTGGG GGTCTTTCAG GGCTCTTACG
  GGAGTTTCGG TAGCGTGCCC TGCGCAGGCG AGGCCTTTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45489273	mCV23980380	ABI	CRAMUS_MOUSE	f	SNP		G				G	C
ss51020948	NES13905094	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	C		C	G		C	G	C
ss135737966	ENSMUSSNP1860449	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					C
ss320909962	CHEV_3_121977483	CHEVERUD	SCREENING_POP	f	SNP									G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31006435					SNP	G	G	G	G	C	G	C	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020948	NES13905094	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122068214 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13766	CpG island 13766			within coordinates
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2			Intron
				Noncoding-Transcript-Variant
Gm17494	predicted gene, 17494			within coordinates
Rr584273	regulatory region 584273			167 bp distal
Rr584274	regulatory region 584274			within coordinates
Tssr31491	transcription start site region 31491			150 bp downstream
Tssr31492	transcription start site region 31492			988 bp upstream