rs31006295 SNP Detail

Summary

• ID
  rs31006295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151810377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATGTGTGTG TGTTTCTCTG TGCATGTGTT AGTGCAAGTG TGTGCACGTG GTTATGTATG
  TGGGTGAGGG TGTAGAAAGT GTATGTGCAT GCACGTGTGT GGGAAAATTT TAACATGAGT
  GTTAACTTCC TCGTGGGGAT TAAGCCCAGG CTTGTACATT GCATATACCC TACTACCGAG
  TTATACCCCA GCTTCCTCAA AACTTCACGT ATAAGGAACT AAATCTTAAG AAAAGCAAAT
  GACAGCATTG ATTGCTCCTG CTTCGATGCA ATGGGTTTTA ATCGTCTGTC AGACTGGCTA
  Y
  AGCAAGTGTC GCGATTTGAG TGAGAACGGT CCCCATAGGC ACGCATACAT TTGAATGTTT
  GGTCTGCACT TGGTGGAACT GATTGTGAAG GATTAGGAGG TGTGGCCTTG TTGGAAGAGG
  TGTGTCTCTG GGGGCAGGCT TTGGGGATTT TAAAAGCCCC ACCATCTCCA CTTAGTGTGT
  GTGCAACCCC CTCCACTGCC TCTGGACTCT GGATCAGGTG CAATCTCTCA GCTACTTCTA
  TAGTGCCATG CATGCGTGCC TGCTGCCATA CTCCCCACAT GATGGTCATG GGCTCACCAC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45489899	mCV24970924	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs31006295					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151810377 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13939	CpG island 13939			688 bp proximal
Cpgi13940	CpG island 13940			1790 bp proximal
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			within coordinates
Rr587452	regulatory region 587452			59 bp proximal
Rr587453	regulatory region 587453			787 bp proximal
Rr587454	regulatory region 587454			853 bp proximal