rs31005408 SNP Detail

Summary

• ID
  rs31005408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90335073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTTCTTC TTTTTCTTCT
  TCTCCCTCCT CCTCTTCTTC CTTACCCAGC ACCAGGAGTG GGAGATCCTA GGTTCTATGA
  TCTCTGTGAG AATTTGGGGT GAGAGGAGGG ATTAAAGAGT TACAGGAGGA AGCTGCAGTG
  TTATGCCTGT GTCTCCAGAA TGGCAAAATG GCAACTTTCA CAGGCCTACT CTCGTCTGTC
  Y
  TTCAACACAT TAGATGCTTA GAAGGCAACT GGAAGGGGAT CTGCTTCACC ACGGGGCCTG
  GCTCCATAAC TTCCTGGCTA TGTGGCTGTT CATTAATGAT GGGCTCGCTT CTGCTGCAGC
  AAAGCAGCTG AGGAAAACCA AAACTAGGAC TGAAATAGTG AGTGGCTAGT TACTTGTAGC
  AGGCGCACTG CCAAAGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45987266	mCV23962457	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss60907189	NES15949553	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	C		T	C	C	C	C	C	C	C	C
ss133377457	ENSMUSSNP1379937	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31005408					SNP	C	C	T	C	C	T	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60907189	NES15949553	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90335073 () rs orientation: forward

Symbol	Name	Function Class
Rr634185	regulatory region 634185	1378 bp proximal
Rr634186	regulatory region 634186	1848 bp proximal
Uroc1	urocanase domain containing 1	Intron