rs31005204 SNP Detail

Summary

• ID
  rs31005204
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129475248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGTATA TCTATCTGTG
  TATGTGTGTA TGCCTGATGC CCATGGAGAC CAGAAGAGGG CACTGGATCC CCTGGAACTG
  GAGTTACAGA TGGCTGGCTA TAAGCCAGCA AATGGGTGCA AGAAATCAAG CCCCAGTCCT
  TGGAAGAGTA GTCCGTGATC TTAGTACAGT GTACTTAGAT ATAATAATAA ATAAATCTTT
  W
  AAAAAAAAAG AATCTTGGAT CCATAGAGGG TCCTGTTTTG CTGCAAATTA TACAAGTGTC
  CTTAGGTATC ACCAGTACTT GCCCATCAGC CAGGCCATAT ATGTGGGTTT GGGCTACCGC
  TGTTTGTGTG TATGTGTGTG TATGTGTCTA TATATAATTC ATTTAAGCAT GCTATCAAGT
  CCCAGGTAAT TACGACCGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45489155	mCV25348747	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss135887713	ENSMUSSNP4626794	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31005204					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129475248 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			1352 bp distal
Rr585060	regulatory region 585060			818 bp distal
Rr585061	regulatory region 585061			134 bp distal
Rr585062	regulatory region 585062			237 bp proximal
Rr585063	regulatory region 585063			848 bp proximal
Rr585064	regulatory region 585064			1860 bp proximal
Tssr35620	transcription start site region 35620			1686 bp downstream